{"id":3860,"date":"2026-10-07T13:01:41","date_gmt":"2026-10-07T20:01:41","guid":{"rendered":"https:\/\/als-enable.lbl.gov\/wordpress\/?page_id=3860"},"modified":"2026-10-07T13:01:42","modified_gmt":"2026-10-07T20:01:42","slug":"als-enable-publications-2025","status":"publish","type":"page","link":"https:\/\/als-enable.lbl.gov\/wordpress\/als-enable-publications-2025\/","title":{"rendered":"ALS-ENABLE Publications: 2025"},"content":{"rendered":"\n

173 publications from all four TOCs, listed in order from TOC1 \u2013 TOC4.<\/p>\n\n\n\n

TOC1 \u2014 Rapid Response Crystallography (120)<\/p>\n\n\n\n

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  1. Berger S, Lee EF, Harris TJ, Tran S, Bera AK, Arguinchona L, Kang A, Sankaran B, Kasapgil S, Miller MS, et al. Computational design of potent and selective binders of BAK and BAX. Science Advances. 2025;11(36):eadt4170. PMID: 40911686. PMCID: PMC12412652. [also TOC2]<\/strong> method MX \u00b7 beamline<\/em> Australian Synchrotron MX2 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  2. Kissai M, Chin EN, Mart\u00ednez-Pe\u00f1a F, Sulpizio A, Stout EP, Usui I, et al. Cladophorol-A is an inhibitor of cyclic GMP-AMP synthase. Bioorg Med Chem Lett. 2025 Jan 1;115:130007. doi: 10.1016\/j.bmcl.2024.130007. PubMed PMID: 39521150. method MX \u00b7 beamline 5.0.1<\/em><\/li>\n\n\n\n
  3. Kohlbrand AJ, Stokes RW, Sankaran B, Cohen SM. Substituent size versus metal binding of inhibitors with variants of influenza endonuclease. Journal of inorganic biochemistry. 2025:113210. PMID: 41512630. PMCID: PMC13298843. [also TOC3]<\/strong> method MX \u00b7 beamline SSRL 12-1 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  4. Presloid CJ, Jiang J, Kandel P, Anderson HR, Beardslee PC, Swayne TM, Schmitz KR. ClpS Directs Degradation of N-Degron Substrates With Primary Destabilizing Residues in Mycolicibacterium smegmatis. Mol Microbiol. 2025 Jan;123(1):16-30. doi: 10.1111\/mmi.15334. Epub 2024 Dec 3. PMID: 39626090; PMCID: PMC11717620. (5.0.1). method MX \u00b7 beamline 5.0.1<\/em><\/li>\n\n\n\n
  5. Samuels ER, Sevrioukova IF. Evaluation of Larger Side-Group Functionalities and the Side\/End-Group Interplay in Ritonavir-Like Inhibitors of CYP3A4. Chem Biol Drug Des. 2025 Jan;105(1):e70043. doi: 10.1111\/cbdd.70043. PMID: 39792691 method MX \u00b7 beamline 8.2.1, 8.2.2<\/em><\/li>\n\n\n\n
  6. Suo Y, Jiang Z, Heberlig GW, Wang EY, Sankaran B, La Clair JJ, Burkart MD. Role of Human Mitochondrial Ketosynthase in Long-Chain Fatty Acid Biosynthesis. Journal of the American Chemical Society. 2025;147(36):33248–33255. PMID: 40891531. method MX \u00b7 beamline NSLS II 17- ID-2 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  7. Wohlever M, Thanthirige S, Scheutzow A, Binsabaan S, Onwunma J, Allen S, Siffer G, Sankaran B. Abstract 1099 Decoding Ubiquilin Phase Separation: Structural Insights and New Paradigms in ALS Pathogenesis. Journal of Biological Chemistry. 2025;301(5). method MX \u00b7 beamline 5.0.2, 8.2.1, 8.2.2 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  8. Sayler RI, Thomas WC, Rose AJ, Marletta MA. Electron transfer in polysaccharide monooxygenase catalysis. Proc Natl Acad Sci U S A. 2025 Jan 7;122(1):e2411229121. doi: 10.1073\/pnas.2411229121. Dec 30. PMID: 39793048. method MX \u00b7 beamline<\/em> 5.0.1, 5.0.2, 5.0.3., 2.0.1<\/li>\n\n\n\n
  9. Schwartz LA, Norman JO, Hasan S, Adamek OE, Dzuong E, Lowenstein JC, Yost OG, Sankaran B, McLaughlin KJ. Carbohydrate Deacetylase Unique to Gut Microbe Bacteroides Reveals Atypical Structure. Biochemistry. 2025 Jan 7;64(1):180-191. doi: 10.1021\/acs.biochem.4c00519. Dec 11. PMID: 39663570. method MX \u00b7 beamline 8.2.2 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  10. Stadnicki EJ, Ludewig H, Kumar RP, Wang X, Qiao Y, Kern D, Bradshaw N. Dual-Action Kinase Inhibitors Influence p38\u03b1 MAP Kinase Dephosphorylation. Proc Natl Acad Sci U S A. 2025 Jan 7;122(1):e2415150122. doi: 10.1073\/pnas.2415150122. PMID: 39739785. method MX \u00b7 beamline 8.2.2<\/em><\/li>\n\n\n\n
  11. Belmontes B, Slemmons KK, Su C, Liu S, Policheni AN, Moriguchi J, et al. AMG 193, a Clinical Stage MTA-Cooperative PRMT5 Inhibitor, Drives Antitumor Activity Preclinically and in Patients with MTAP-Deleted Cancers. Cancer Discov. 2025 Jan 13;15(1):139-161. doi: 10.1158\/2159-8290.CD-24-0887. PubMed PMID: 39282709; PubMed Central PMCID: PMC11726016. method MX \u00b7 beamline 5.0.2<\/em><\/li>\n\n\n\n
  12. Liu C, Rao G, Nguyen J, Britt RD, Rittle J. O2 Activation and Enzymatic C-H Bond Activation Mediated by a Dimanganese Cofactor. J Am Chem Soc. 2025 Jan 15;147(2):2148-2157. doi: 10.1021\/jacs.4c16271. Epub 2025 Jan 1. PMID: 39741465. method MX \u00b7 beamline<\/em> 5.0.1, 5.0.2<\/li>\n\n\n\n
  13. Avery NG, Young IR, Lu S, Vaughan JD, Korus PS, Richardson TN, Childers KC, Smirnov SL, Spiegel PC Jr. Biophysical characterization of blood coagulation factor VIII binding to lipid nanodiscs that mimic activated platelet surfaces. J Thromb Haemost. 2025 Feb;23(2):513-524. doi: 10.1016\/j.jtha.2024.11.003. PMID: 39549835; PMCID: PMC11786986. method MX \u00b7 beamline<\/em> 5.0.1<\/li>\n\n\n\n
  14. Heberlig GW, La Clair JJ, Burkart MD. Crosslinking intermodular condensation in non-ribosomal peptide biosynthesis. Nature. 2025 Feb;638(8049):261-269. doi: 10.1038\/s41586-024-08306-y. PubMed PMID: 39663458; PubMed Central PMCID: PMC12121096. method MX \u00b7 beamline 5.0.1<\/em><\/li>\n\n\n\n
  15. Irrinki AM, Kaur J, Randhawa B, McFadden R, Snyder C, Truong H, et al. Activating PKC-\u03b5 induces HIV expression with improved tolerability. PLoS Pathog. 2025 Feb;21(2):e1012874. doi: 10.1371\/journal.ppat.1012874. PubMed PMID: 39913544; PubMed Central PMCID: PMC11801715. method MX \u00b7 beamline 5.0.1<\/em><\/li>\n\n\n\n
  16. Lee S, Kibler RD, Ahn G, Hsia Y, Borst AJ, Philomin A, Kennedy MA, Huang B, Stoddard B, Baker D. Four-component protein nanocages designed by programmed symmetry breaking. Nature. 2025 Feb;638(8050):546-552. doi: 10.1038\/s41586-024-07814-1. Epub 2024 Dec 18. PMID: 39695226. [also<\/strong> TOC2]<\/strong> method MX \u00b7 beamline 5.0.1<\/em><\/li>\n\n\n\n
  17. Li B, Usai R, Campbell J, Wang Y. Elucidating ligand interactions and small-molecule activation in the pyrrolnitrin biosynthetic enzyme PrnB. J Biol Chem. 2025 Feb;301(2):108123. doi: 10.1016\/j.jbc.2024.108123. Epub 2024 Dec 25. PMID: 39725034. method MX \u00b7 beamline 5.0.3<\/em><\/li>\n\n\n\n
  18. Rodriguez Carrero RJ, Lloyd CT, Borkar J, Nath S, Mirica LM, Nair S, et al. Genetic and biochemical characterization of a radical SAM enzyme required for post-translational glutamine methylation of methyl-coenzyme M reductase. mBio. 2025 Feb 5;16(2):e0354624. doi: 10.1128\/mbio.03546-24. PubMed PMID: 39772843; PubMed Central PMCID: PMC11796369. method MX \u00b7 beamline 5.0.1, 5.0.2, 5.0.1 \u00b7 non-biomedical<\/em><\/li>\n\n\n\n
  19. Pham S, Zhao B, Neetu N, Sankaran B, Patil K, Ramani S, Song Y, Estes MK, Palzkill T, Prasad BVV. Conformational flexibility is a critical factor in designing broad-spectrum human norovirus protease inhibitors. J Virol. 2025 Feb 25;99(2):e0175724. doi: 10.1128\/jvi.01757-24. Epub 2025 Jan 28. PMID: 39873493. method MX \u00b7 beamline 5.0.1, 5.0.2, 8.2.1, 8.2.2 \u00b7 staff author \u00b7 Banumathi Sankaran<\/em><\/li>\n\n\n\n
  20. Huang D, Manoni F, Sun Z, Liu R, Allen JR, Banerjee A, et al. Identification of Structurally Novel KRAS(G12C) Inhibitors through Covalent DNA-Encoded Library Screening. J Med Chem. 2025 Feb 27;68(4):4801-4817. doi: 10.1021\/acs.jmedchem.4c03071. PubMed PMID: 39930787; PubMed Central PMCID: PMC11873997. method MX \u00b7 beamline 5.0.2<\/em><\/li>\n\n\n\n
  21. Feldman D, Sims JN, Li X, Johnson R, Gerben S, Kim DE, Richardson C, Koepnick B, Eisenach H, Hicks DR, Yang EC, Wicky BIM, Milles LF, Bera AK, Kang A, Brackenbrough E, Joyce E, Sankaran B, Lubner JM, Goreshnik I, Vafeados D, Allen A, Stewart L, MacCoss MJ, Baker D. Massively parallel assessment of designed protein solution properties using mass spectrometry and peptide barcoding. bioRxiv [Preprint]. 2025 Feb 28:2025.02.24.639402. doi: 10.1101\/2025.02.24.639402. PMID: 40060547; PMCID: PMC11888366.. method MX \u00b7 beamline 8.2.2, 8.2.1, NSLSII -17-ID1, NSLSII 17-ID-2\u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  22. Castro A, Ruiz Rivera A, Moorman CC, Wolf-Saxon ER, Mims HN, Vasquez Meza VI, Rangel MA, Loera MM, Bond IC, Buchanan SB, Villarreal E, Tripathi S, Rubin SM, Burke JR. Structural and functional analysis of cancer-associated missense variants in the retinoblastoma protein pocket domain. J Biol Chem. 2025 Mar;301(3):108284. doi: 10.1016\/j.jbc.2025.108284. Epub 2025 Feb 10. PMID: 39938803; PMCID: PMC11931385. method MX \u00b7 beamline 5.0.1<\/em><\/li>\n\n\n\n
  23. Duan H, Wu W, Li P, Bouyain S, Garcia BL, Geisbrecht BV. Blocking activation of the C1r zymogen defines a novel mode of complement inhibition. J Biol Chem. 2025 Mar;301(3):108301. doi: 10.1016\/j.jbc.2025.108301. PubMed PMID: 39947467; PubMed Central PMCID: PMC11928764. method MX \u00b7 beamline 5.0.1<\/em><\/li>\n\n\n\n
  24. Meeks KR, Ji J, Scott GK, Campbell AC, Nix JC, Tadeo A, Ellerby LM, Benz CC, Tanner JJ. Biochemical, structural, and cellular characterization of S-but-3-yn-2-ylglycine as a mechanism-based covalent inactivator of the flavoenzyme proline dehydrogenase. Arch Biochem Biophys. 2025 Mar;765:110319. doi: 10.1016\/j.abb.2025.110319. Epub 2025 Jan 25. PMID: 39870289. method MX \u00b7<\/em> beamline<\/em> 4.2.2, 8.2.1<\/li>\n\n\n\n
  25. DiDonato M, Simpson CT, Vo T, Knuth M, Geierstanger B, Jamontt J, et al. A novel interleukin-10 antibody graft to treat inflammatory bowel disease. Structure. 2025 Mar 6;33(3):475-488.e7. doi: 10.1016\/j.str.2024.12.010. PubMed PMID: 39798572. method MX \u00b7 beamline 5.0.3<\/em><\/li>\n\n\n\n
  26. Ireland KA, Kayrouz CM, Abbott ML, Seyedsayamdost MR, Davis KM. Structural and functional analysis of SAM-dependent N-methyltransferases involved in ovoselenol and ovothiol biosynthesis. Structure. 2025 Mar 6;33(3):528-538.e5. doi: 10.1016\/j.str.2024.12.020. Epub 2025 Jan 24. PMID: 39862859. method MX \u00b7 beamline<\/em> 8.2.2, 8.2.1<\/li>\n\n\n\n
  27. Dimagi Dias-Solange, My Tra Le, Keerthi Gottipati, Kyung H Choi Structure of coxsackievirus cloverleaf RNA and 3Cpro dimer establishes the RNA-binding mechanism of enterovirus protease 3Cpro. Sci Adv. 2025 Mar 14;11(11):eads6862. doi: 10.1126\/sciadv.ads6862. Epub 2025 Mar 12. PMID: 40073119 PMCID: PMC11900867 DOI: 10.1126\/sciadv.ads6862. method MX \u00b7 beamline<\/em> 8.2.2<\/li>\n\n\n\n
  28. Georgiades JD, Berkovich DA, McKee SR, Smith AR, Sankaran B, Flentie KN, Casta\u00f1eda CH, Grohmann DG, Rohatgi R, Lasky C, Mason TA, Champine JE, Miller PA, M\u00f6llmann U, Moraski GC, Franzblau SG, Miller MJ, Stallings CL, Jez JM, Hathaway BA, Wencewicz TA. Expanding the Landscape of Dual Action Antifolate Antibacterials through 2,4-Diamino-1,6-dihydro-1,3,5-triazines. ACS Infect Dis. 2025 Mar 14;11(3):689-702. doi: 10.1021\/acsinfecdis.4c00768. Epub 2025 Feb 14. PMID: 39950956. method MX<\/em> beamline 8.2.2 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  29. Williford EE, Xue YP, Tang WK, Li R, Jones KV, Blake KS, Blaine HC, Lian X, Stallings CL, Tolia NH, Dantas G, Wencewicz TA. C10-Benzoate Esters of Anhydrotetracycline Inhibit Tetracycline Destructases and Recover Tetracycline Antibacterial Activity. ACS Infect Dis. 2025 Mar 14;11(3):738-749. doi: 10.1021\/acsinfecdis.4c00912. Epub 2025 Feb 6. PMID: 39912785. method MX \u00b7 beamline<\/em> 5.0.2<\/li>\n\n\n\n
  30. Kalita P, Khatavkar O, Uwase G, Korshunova Y, Hu Y, Wagner ND, Xu J, Pan J, Nix JC, Gross ML, Brody SL, Borek D, Amarasinghe GK, Payton JE, Leung DW. “Molecular basis for human respiratory syncytial virus transcriptional regulator NS1 interactions with MED25.” Nature communications 2025 Mar 25 ;16(1):2883 PMID: 40128225 PMCID: PMC11933697. method MX \u00b7 beamline<\/em> 8.2.2, 4.2.2, 8.2.1<\/li>\n\n\n\n
  31. Cregg J, Pota K, Tomlinson ACA, Yano J, Marquez A, Liu Y, et al. Discovery of Elironrasib (RMC-6291), a Potent and Orally Bioavailable, RAS(ON) G12C-Selective, Covalent Tricomplex Inhibitor for the Treatment of Patients with RAS G12C-Addicted Cancers. J Med Chem. 2025 Mar 27;68(6):6041-6063. doi: 10.1021\/acs.jmedchem.4c02313. PubMed PMID: 39993169. beamline 5.0.2<\/em><\/li>\n\n\n\n
  32. Sarvary I, Vestergaard M, Moretti L, Andersson J, Peir\u00f3 Cadah\u00eda J, Cowland S, et al. From DNA-Encoded Library Screening to AM-9747: An MTA-Cooperative PRMT5 Inhibitor with Potent Oral In Vivo Efficacy. J Med Chem. 2025 Mar 27;68(6):6534-6557. doi: 10.1021\/acs.jmedchem.4c03101. PubMed PMID: 40102181; PubMed Central PMCID: PMC11956014. method MX \u00b7 beamline 5.0.1, 5.0.2<\/em><\/li>\n\n\n\n
  33. Goyal L, DiToro D, Facchinetti F, Martin EE, Peng P, Baiev I, et al. A model for decoding resistance in precision oncology: acquired resistance to FGFR inhibitors in cholangiocarcinoma. Ann Oncol. 2025 Apr;36(4):426-443. doi: 10.1016\/j.annonc.2024.12.011. PubMed PMID: 39706336. method MX \u00b7 beamline 5.0.2<\/em><\/li>\n\n\n\n
  34. Nguyen CL, Fan W, Fisher S, Matthews K, Norman JO, Abendroth J, et al. Structures of Legionella pneumophila serogroup 1 peptide deformylase bound to nickel(II) and actinonin. Acta Crystallogr F Struct Biol Commun. 2025 Apr 1;81(Pt 4):163-170. doi: 10.1107\/S2053230X25001876. PubMed PMID: 40091854; PubMed Central PMCID: PMC11970127. method MX \u00b7 beamline 5.0.1<\/em><\/li>\n\n\n\n
  35. Miranda R, Anson F, Smith ST, Ultsch M, Tenorio CA, Roug\u00e9 L, et al. Discovery and characterization of potent macrocycle inhibitors of ubiquitin-specific protease-7. Structure. 2025 Apr 3;33(4):705-717.e4. doi: 10.1016\/j.str.2025.01.021. PubMed PMID: 39983720. method MX \u00b7 beamline 5.0.2<\/em><\/li>\n\n\n\n
  36. Jones CP, Ferr\u00e9-D’Amar\u00e9 AR. Structural switching dynamically controls the doubly pseudoknotted Rous sarcoma virus-programmed ribosomal frameshifting element. Proc Natl Acad Sci U S A. 2025 Apr 8;122(14):e2418418122. doi: 10.1073\/pnas.2418418122. Epub 2025 Apr 2. PMID: 40172966. method MX \u00b7<\/em> beamline<\/em> 5.0.1<\/li>\n\n\n\n
  37. Srisantitham S, Walker AL, Markel U, Tezcan FA. De Novo Design of Proteins for Autocatalytic Isopeptide Bond Formation. J Am Chem Soc. 2025 Apr 9; 147(14): 12338-12346. doi: 10.1021\/jacs.5c03319. Epub 2025 Mar 26. PMID: 40138671. [also TOC3]<\/strong> method MX \u00b7 beamline<\/em> 8.3.1, 5.0.1<\/li>\n\n\n\n
  38. Weerawarna PM, Li H, Rathnayake AD, Hardy CD, Poulos TL, Silverman RB. A Tetrahydrobiopterin-Displacing Potent Neuronal Nitric Oxide Synthase Inhibitor with an Unprecedented Binding Mode. ACS Med Chem Lett. 2025 Apr 10;16(4):651-659. doi: 10.1021\/acsmedchemlett.5c00062. PubMed PMID: 40236557; PubMed Central PMCID: PMC11995208. method MX \u00b7 beamline 5.0.2, 8.2.2<\/em><\/li>\n\n\n\n
  39. Schlichthaerle T, Yang A, Detraux D, Johnson DE, Peach CJ, Edman NI, Sniezek C, Williams CA, Arora S, Katiyar N, Chen I, Etemadi A, Favor A, Lee D, Kubo C, Coventry B, Huang B, Gerben S, Ennist N, Milles L, Sankaran B, Kang A, Nguyen H, Bera AK, Negahdari B, Hamazaki N, Schweppe DK, Stewart L, Young JE, Bunnett NW, Ruohola-Baker H, Mathieu J, Pattwell SS, Garcia KC, Baker D. Designed NGF mimetics with reduced nociceptive signatures in neurons. bioRxiv [Preprint; version 1]. 2025 Apr 14. doi: 10.1101\/2025.04.14.648806. method MX \u00b7 beamline NSLS II Beamline 17-ID-2 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  40. Kim W, Zheng Z, Kim K, Lee YH, Liu HW, Zhang YJ. Structural and mechanistic insights into KslB, a bacterial Pictet-Spenglerase in kitasetaline biosynthesis. RSC Chem Biol. 2025 Apr 16;6(6):933-941. doi: 10.1039\/d5cb00070j. PMID: 40271149; PMCID: PMC12012969. method MX \u00b7 beamline<\/em> 8.2.2 \u00b7 non-biomedical<\/li>\n\n\n\n
  41. Trasvi\u00f1a-Arenas CH, Dissanayake UC, Tamayo N, Hashemian M, Lin WJ, Demir M, Hoyos-Gonzalez N, Fisher AJ, Cisneros GA, Horvath MP, David SS. Structure of human MUTYH and functional profiling of cancer-associated variants reveal an allosteric network between its [4Fe-4S] cluster cofactor and active site required for DNA repair. Nat Commun. 2025 Apr 16;16(1) :3596. doi: 10.1038\/s41467-025-58361-w. PMID: 40234396. [also TOC3]<\/strong> method MX \u00b7 beamline<\/em> 5.0.1<\/li>\n\n\n\n
  42. Zhu J, Kreutzer AG, Liu Z, Li X, Richter SM, Pophristic V, Nowick JS. A \u03b2-hairpin peptide derived from A\u03b2 forms different oligomers in the crystal state and in aqueous solution. Org Biomol Chem. 2025 Apr 16;23(16):3881-3893. doi: 10.1039\/d5ob00296f. PMID: 40130612; PMCID: PMC12003087. method MX \u00b7<\/em> beamline<\/em> 5.0.2<\/li>\n\n\n\n
  43. Lauko A, Pellock SJ, Sumida KH, Anishchenko I, Juergens D, Ahern W, Jeung J, Shida AF, Hunt A, Kalvet I, Norn C, Humphreys IR, Jamieson C, Krishna R, Kipnis Y, Kang A, Brackenbrough E, Bera AK, Sankaran B, Houk KN, Baker D. Computational design of serine hydrolases. Science. 2025 Apr 18;388(6744):eadu2454. doi: 10.1126\/science.adu2454. Epub 2025 Apr 18. PMID: 39946508. method MX \u00b7 beamline 5.0.3, 8.2.2 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  44. Cannistraci E, Srinivasu BY, Chavez Orozco J Jr, Gozzi K, Wales TE, Schumacher MA. Allosteric activation mechanism of DriD, a WYL-domain containing transcription regulator. Commun Biol. 2025 Apr 29;8(1):679. doi: 10.1038\/s42003-025-08111-x. PMID: 40301632. method MX \u00b7 beamline<\/em> 5.0.2<\/li>\n\n\n\n
  45. Benjamin Basanta, Karina Nugroho, Nicholas L Yan, Gabriel M Kline, Evan T Powers, Felix J Tsai, Mengyu Wu, Althea Hansel-Harris, Jason S Chen, Stefano Forli, Jeffrey W Kelly, Gabriel C Lander. The conformational landscape of human transthyretin revealed by cryo-EM. Nat Struct Mol Biol. 2025 May;32(5):876-883. doi: 10.1038\/s41594-024-01472-7. Epub 2025 Jan 22. PMID: 39843982 PMCID: PMC12086048, DOI: 10.1038\/s41594-024-01472-7. method MX \u00b7 beamline<\/em> 5.0.1<\/li>\n\n\n\n
  46. Daly AE, Chang AB, Purbey PK, Williams KJ, Li S, Redelings BD, Yeh G, Wu Y, Pope SD, Venkatesh B, Li S, Nguyen K, Rodrigues J, Jorgensen K, Dasgupta A, Siggers T, Chen L, Smale ST. Stepwise neofunctionalization of the NF-\u03baB family member Rel during vertebrate evolution. Nat Immunol. 2025 May;26(5):760-774. doi: 10.1038\/s41590-025-02138-2. Epub 2025 Apr 30. PMID: 40307452; PMCID: PMC12043515. method MX \u00b7 beamline<\/em> 8.2.2<\/li>\n\n\n\n
  47. Wang, J., A.C. Vilbert, L.H. Williams, E.N. Mirts, C. Cui, and Y. Lu, “Unexpected effect of an axial ligand mutation in the type 1 copper center in small laccase: structure-based analyses and engineering to increase reduction potential and activity,” Chemical Science, (May 2025). doi:10.1039\/D5SC02177D. PMID: 40438172 PMCID: PMC12109610. method MX \u00b7 beamline<\/em> 8.2.1 \u00b7 non-biomedical<\/li>\n\n\n\n
  48. Herle G, Fang J, Song J. Structure of an Unfavorable de Novo DNA Methylation Complex of Plant Methyltransferase ZMET2. J Mol Biol. 2025 May 5;437(17):169186. doi: 10.1016\/j.jmb.2025.169186. Epub ahead of print. PMID: 40335018. method MX \u00b7 beamline<\/em> 5.0.1<\/li>\n\n\n\n
  49. Ouzon-Shubeita H, Barnes R, Schmaltz LF, Lee S. Structure of a DNA Glycosylase Bound to a Nicked T:G Mismatch-Containing DNA. Molecules. 2025 May 7;30(9). doi: 10.3390\/molecules30092083. PubMed PMID: 40363888; PubMed Central PMCID: PMC12073362. method MX \u00b7 beamline 5.0.1, 5.0.2<\/em><\/li>\n\n\n\n
  50. Oh J, Konovalov KA, Hou P, Chong J, Huang X, Wang D. Transcription-Coupled Template Reconfiguration of 8-Oxoguanine for Error-Prone Transcription Revealed by Time-Resolved X-ray Crystallography and Molecular Dynamics. J Am Chem Soc. 2025 May 14;147(19):16396-16403. doi: 10.1021\/jacs.5c02687. PubMed PMID: 40305462; PubMed Central PMCID: PMC12122184. method MX \u00b7 beamline 5.0.3, 8.2.1, 8.2.2<\/em><\/li>\n\n\n\n
  51. Re RN, La Clair JJ, Noel JP, Burkart MD. Elucidating the Iterative Elongation Mechanism in a Type III Polyketide Synthase. J Am Chem Soc. 2025 May 14;147(19):16705-16714. doi: 10.1021\/jacs.5c05635. Epub 2025 May 1. PMID: 40312803. method MX \u00b7 beamline<\/em> 5.0.2, 8.2.2 \u00b7 non-biomedical<\/li>\n\n\n\n
  52. Andersson J, Cowland S, Vestergaard M, Yang Y, Liu S, Fang X, et al. MTA-cooperative PRMT5 inhibitors from cofactor-directed DNA-encoded library screens. Proc Natl Acad Sci U S A. 2025 May 20;122(20):e2425052122. doi: 10.1073\/pnas.2425052122. PubMed PMID: 40377999; PubMed Central PMCID: PMC12107103. method MX \u00b7 beamline 5.0.2<\/em><\/li>\n\n\n\n
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  99. Chandramouly G, Fried W, Gordon J, Ralph D, Keuk C, Kumari S, Ramanjulu M, Auerbacher W, Minakhin L, Tredinnick T, Tiberi B, Morton G, Betsch R, Cai KQ, Vekariya UM, Tyagi M, Skorski T, Karakashev S, Johnson N, Childers WE, Chen XS, Pomerantz RT. RTx-303, an Orally Bioavailable Pol\u03b8 Polymerase Inhibitor That Potentiates PARP Inhibitors in BRCA Mutant Tumors. J Med Chem. 2025 Nov; 68(21):22196-22215. doi: 10.1021\/acs.jmedchem.5c00551. PMID: 41124685. PMCID: PMC12621202. method MX \u00b7 beamline 5.0.3<\/em><\/li>\n\n\n\n
  100. Glasscock CJ, Pecoraro RJ, McHugh R, Doyle LA, Chen W, Boivin O, Lonnquist B, Na E, Politanska Y, Haddon HK, Cox D, Norn C, Coventry B, Goreshnik I, Vafeados D. Lee GR, Gordan R, Stoddard BL, MiMaio F, Baker D. Computational design of sequence-specific DNA-binding proteins. Nat Struct Mol Biol. 2025 Nov;32(11):2252-2261. PMID: 40940539. PMCID: PMC12618268. DOI: 10.1038\/s41594-025-01669- 4. method MX \u00b7 beamline 5.0.1<\/em><\/li>\n\n\n\n
  101. Klebba, J.E., N. Roy, S. Bernard, S. Grabow, M.A. Hoffman, H. Miao, J. Tamiya, J. Wang, C. Berry, A. Esparza-Oros, R. Lin, Y. Liu, M. Pariollaud, H. Parker, I. Mochalkin, S. Rana, A.N. Snead, E.J. Walton, T.E. Wyrick, E. Aitchison, K. Bedke, J.C. Brannon, J.M. Chick, K. Hee, B.D. Horning, M. Ismail, K.N. Lamb, W. Lin, J. Metzger, M.K. Pastuszka, J.W. Pollock, J.J. Sigler, M. Tomaschko, E. Tran, C. Yue, T.M. Kinsella, M. Molina-Arcas, B.N. Cook, G.M. Simon, D.S. Weinstein, J. Downward, and M.P. Patricelli, “Covalent inhibitors of the PI3K? RAS binding domain impair tumor growth driven by RAS and HER2,” Science 390(6774), 702-709 (2025 Nov). (doi:10.1126\/science.adv2684). PMID: 41066541. PMCID: PMC7618302. method MX \u00b7 beamline 5.0.2<\/em><\/li>\n\n\n\n
  102. Lentz, A., S. Lanning, K.R. Iranpur, L. Ricemeyer, C.F. Arias, and R. DuBois. Structure of the human astrovirus capsid spike in complex with the neonatal Fc receptor. Nature Communications 16(1), 9621 (2025 Nov). (doi:10.1038\/s41467-025-65203-2). PMID: 41184319. PMCID: PMC12583548.. method MX \u00b7<\/em> beamline<\/em> 5.0.1<\/li>\n\n\n\n
  103. Martyn GD, Kalagiri R, Veggiani G, Stanfield RL, Choudhuri I, Sala M, Meisenhelder J, Chen C, Biswas A, evy R, yumkis D, Wilson I, Hunter T, Sidhu SS. Using phage display for rational engineering of a higher-affinity humanized 3′ phosphohistidine-specific antibody. Commun Chem. 2025 Nov; 8(1):381. PMID: 41310398. doi: 10.1016\/0021-9991(76)90078-4. PMCID: PMC12660843. method MX \u00b7 beamline 5.0.3<\/em><\/li>\n\n\n\n
  104. Sullivan AE, Nabhani A, Izrailevsky DS, Schinkel K, Hoffman CRK, Robbins LK, Nagy TA, Duncan ML, Ledvina HE, Erbse AH, Kiby EM, Tak U, Dinh DM, Ednacot EMQ, Nguyen CM, Burroughs AM, Aravind L, Whiteley AR, Morehouse BR. The Panoptes system uses decoy cyclic nucleotides to defend against phage. Nature. 2025 Nov;647(8091):988-996. PMID: 41034579. PMCID: PMC12657218. DOI: 10.1038\/s41586-025-09557-z. method MX \u00b7 beamline 5.0.1<\/em><\/li>\n\n\n\n
  105. Tutter A, Buckley D, Golosov AA, Ma X, Shu W, Kay DJJ, et al. A small-molecule VHL molecular glue degrader for cysteine dioxygenase 1. Nat Chem Biol. 2025 Nov;21(11):1688-1696. doi: 10.1038\/s41589-025-01936-x. PubMed PMID: 40555806. method MX \u00b7 beamline 5.0.2<\/em><\/li>\n\n\n\n
  106. Wu, J., J. Bruystens, P. Sahoo, J. Bubis, R.A. Maillard, S. Taylor, and R. Ilouz, “N3A motifs in RI \u03b2mediate allosteric crosstalk between cAMP and ATP in PKA activation,” Protein Science 34(11), e70332 (2025 Nov). (doi:10.1002\/pro.70332). PMID: 41108566. PMCID: PMC12535202. method MX \u00b7 beamline<\/em> 8.2.2<\/li>\n\n\n\n
  107. Fang Z, Acikgoz O, Jia X, Essex J, Wen R, Szostak JW. Impact of 2′-deoxyribo-purine substrates on nonenzymatic RNA template-directed primer extension. Nucleic Acids Res. 2025 Nov 13. PMID: 41261857. PMCID: PMC12630140. DOI: 10.1093\/nar\/gkaf1228. method MX \u00b7 beamline 5.0.1, 5.0.3, 8.2.1<\/em><\/li>\n\n\n\n
  108. Spradlin SF, Dickerson KA, Batey RT. Structural and functional clues challenge the hypothesis that the yjdF riboswitch is natively regulated through broad recognition of azaaromatic compounds. Nucleic Acids Res. 2025 Nov 13;53(21):gkaf1278. doi: 10.1093\/nar\/gkaf1278. PMID: 41277687. PMCID: PMC12641257. method MX \u00b7 beamline 8.2.2 \u00b7 non-biomedical<\/em><\/li>\n\n\n\n
  109. Doherty, E.E., J. Nomburg, B.A. Adler, S. Lopez, K. Hsieh, N. Price, N. Blount, and J.A. Doudna. Divergent viral phosphodiesterases for immune signaling evasion. Cell Host & Microbe 33(12), 2043-2051.e6 (Dec 2025). (doi:10.1016\/j.chom.2025.10.018). PMID: 41297541. PMCID: PMC12730640. method<\/em> MX \u00b7 beamline<\/em> 8.2.1<\/li>\n\n\n\n
  110. Hajjar, M., V.A. Maola, J. Lee, M.J. Holguin, R.N. Quijano, K.K. Nguyen, K.L. Ho, J.V. Medina, E. Botello-Cornejo, B. Barpuzary, N. Chim, and J. Chaput, “Directed evolution of a TNA polymerase identifies independent paths to fidelity and catalysis,” Nature Communications 17(1), 925 (Dec 2025). (doi:10.1038\/s41467-025-67652-1). PMID: 41413390. PMCID: PMC12830623. method MX \u00b7 beamline<\/em> 8.2.1<\/li>\n\n\n\n
  111. Katinas JM, Amporndanai K, Taylor AJ, Rose KL, Gareiss PC, Crespo RA, Phan J, Waterson AG, Fesik SW. “Nuclear Magnetic Resonance-based fragment screen of the E3 ligase Fem-1 homolog B.” Protein science : a publication of the Protein Society 2025 Dec ;34(12):e70365. PMID: 41229306. PMCID: PMC12612594. method MX \u00b7 beamline 8.2.1, 8.2.2<\/em><\/li>\n\n\n\n
  112. Khan S, Lum J, Stephenson H, Kohli PB, Mortenson D, Ramakrishnan D et al. A highly selective TCR-mimic antibody reveals unexpected mechanisms of HBV peptide-MHC recognition and previously unknown target biology. MAbs. 2025 Dec; 17(1):2562998. PMID: 40990156. doi: 10.1016\/0092-8674(78)90296-9. PMCID: PMC12461897. method MX \u00b7 beamline 5.0.2<\/em><\/li>\n\n\n\n
  113. Rivera P, Lu S, Ngango D, Sankaran B, Venkataram Prasad B, Palzkill T. A \u03b2-lactamase inhibitory protein mutant displays high potency and a broad inhibition profile due to an altered binding mode with \u03b2-lactamases. J Biol Chem. 2025 Dec;301(12):110850. doi: 10.1016\/j.jbc.2025.110850. PubMed PMID: 41135675; PubMed Central PMCID: PMC12666564. method MX \u00b7 beamline 8.2.1 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  114. de Haas RJ, Pyles H, Huddy EB, van Ossenbruggen J, Zheng C, van den Broek D, et al. Inhibition of ice recrystallization with designed twistless helical repeat proteins. Proc Natl Acad Sci U S A. 2025 Dec 2;122(48):e2514871122. doi: 10.1073\/pnas.2514871122. PubMed PMID: 41289379; PubMed Central PMCID: PMC12685108. method MX \u00b7 beamline 8.2.1, 8.2.2 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  115. Wang Z, Cheong S, Pereira JH, Hu W, Guo Y, DeGiovanni A, et al. A highly active Burkholderia polyketoacyl-CoA thiolase for production of triacetic acid lactone. Nat Commun. 2025 Dec 9;16(1):10990. doi: 10.1038\/s41467-025-65946-y. PubMed PMID: 41365852; PubMed Central PMCID: PMC12689856. method MX \u00b7 beamline 8.2.2 \u00b7 staff author: Paul D. Adams \u00b7 non-biomedical<\/em><\/li>\n\n\n\n
  116. Jeong JW, Chang T, Murray JM, Gonciarz RL, Salvant JM, St Amant AH, et al. Discovery of Potent, Selective and Efficacious Aminopyrazole Inhibitors of PLK4. J Med Chem. 2025 Dec 11;68(23):25198-25212. doi: 10.1021\/acs.jmedchem.5c02200. PubMed PMID: 41329867. method MX \u00b7 beamline 8.2.1<\/em><\/li>\n\n\n\n
  117. Schumacher MA, Singh RR, Salinas R. Structural Studies on the M. tuberculosis Nucleoid-associated-Protein, NapA, Indicates DNA Bridging Mechanism. J Mol Biol. 2025 Dec 15;437(24):169486. doi: 10.1016\/j.jmb.2025.169486. PMID: 41106805. PMCID: PMC12616451. method MX \u00b7 beamline 5.0.2<\/em><\/li>\n\n\n\n
  118. Wang X, Sun J, Ahmad S, Yang D, Li F, Chan UH, Zeng H, Simoben CV, Green SR, Silva M, Houliston S, Dong A, Bolotokova A, Gibson E, Kutera M, Ghiabi P, Kondratov I, Matviyuk T, Chuprina A, Mavridi D, Lenz C, Joerger AC, Brown BD, Heath RB, Yue WW, Robbie LK, Beyett TS, M\u00fcller S, Knapp S, Owen DR, Harding R, Schapira M, Brown PJ, Santhakumar V, Ackloo S, Arrowsmith CH, Edwards AM, Peng H, Halabelian L. “Enantioselective protein affinity selection mass spectrometry (E-ASMS).” Nature communications 2025 Dec 17 ;17(1):651. PMID: 41407727. PMCID: PMC12816581. method MX \u00b7 beamline<\/em> 5.0.2<\/em><\/li>\n\n\n\n
  119. Haas CM, Rankovic S, Lewis HK, Carr KD, Weidle C, Gerdes SS, Nuss LR, Ruiz F, Moiz S, Fiorelli M, Grey E, McGowan J, Kumar N, Creanga A, Kang A, Nguyen H, Wang Y, Sankaran B, Dosey A, Ravichandran R, Bera AK, Leaf EM, DeForest CA, Kanekiyo M, Borst AJ, King NP. De novo design of protein nanoparticles with integrated functional motifs. bioRxiv [Preprint; version 1]. 2025 Dec 22. doi: 10.64898\/2025.12.19.695620. method MX \u00b7 NSLS II, beamline 17-ID-2 \u00b7 staff author: Banumathi Sankaran<\/em><\/li>\n\n\n\n
  120. Hudson GA, Pereira JH, Winegar PH, FitzGerald DM, DeGiovanni A, Chen X, et al. Enzymology and Structural Basis of Glycosyltransferases Involved in Saponin C28 Carboxylic Acid O\u2011d\u2011Fucosylation. JACS Au. 2025 Dec 22;5(12):6011-6024. doi: 10.1021\/jacsau.5c00907. PubMed PMID: 41450652; PubMed Central PMCID: PMC12728629. method MX \u00b7 beamline 5.0.1, 8.2.2 \u00b7 staff author: Paul D. Adams \u00b7 non-biomedical<\/em><\/li>\n<\/ol>\n\n\n\n

    TOC2 \u2014 High Quality and High Throughput SAXS (28)<\/h2>\n\n\n\n
      \n
    1. Botting JM, Rahman MK, Xu H, Yue J, Guo W, Del Mundo JT, Hammel M, Motaleb MA, Liu J. FlbB forms a distinctive ring essential for periplasmic flagellar assembly and motility in Borrelia burgdorferi. PLoS Pathog. 2025 Jan 8;21(1):e1012812. doi: 10.1371\/journal.ppat.1012812. eCollection 2025 Jan. PMID: 39777417; PMCID: PMC11750108 (12.3.1) method SAXS \u00b7 beamline 12.3.1 \u00b7 staff author: Michal Hammel<\/em><\/li>\n\n\n\n
    2. Gan J, Juang V, Wang K, Xia Z, Ackermann R, Yu M, Dorsey KH, Lin W, Wang X, Wang Y, Liang J, Zheng J, Xu X, Park JH, Schwendeman A. Reverse engineering of Onivyde\u00ae – Irinotecan liposome injection. Int J Pharm. 2025 Jan 25;669:125000. doi: 10.1016\/j.ijpharm.2024.125000. Epub 2024 Nov 27. PMID: 39608586 (12.3.1) method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    3. Brosey CA, Shen R, Tainer JA. NADH-bound AIF activates the mitochondrial CHCHD4\/MIA40 chaperone by a substrate-mimicry mechanism. EMBO J. 2025 Feb;44(4):1220-1248. doi: 10.1038\/s44318-024-00360-6. Epub 2025 Jan 13. PMID: 39806100; PMCID: PMC11832770 (8.3.1,12.3.1) [also TOC3]<\/strong> method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    4. Nicholson V, Nguyen K, Gollub E, McCoy M, Yu F, Holehouse AS, Sukenik S, Boothby TC. \u201cLEA_4 motifs function alone and in conjunction with synergistic cosolutes to protect a labile enzyme during desiccation.\u201d Protein science : a publication of the Protein Society 2025 Feb ;34(2):e70028 PMID: 39840786 PMCID: PMC11751883 (available on 2026-01-22) (12.3.1) method SAXS \u00b7 beamline 12.3.1 \u00b7 non-biomedical<\/em><\/li>\n\n\n\n
    5. Patt E, Classen S, Hammel M, Schneidman-Duhovny D. \u201cPredicting RNA structure and dynamics with deep learning and solution scattering.\u201d Biophysical journal 2025 Feb 04 ;124(3):549-564. PMID: 39722452 PMCID: PMC11866959. method SAXS \u00b7 beamline 12.3.1 \u00b7 staff author: Michal Hammel<\/em><\/li>\n\n\n\n
    6. Cory SA, Lin CW, Patra S, Havens SM, Putnam CD, Shirzadeh M, Russell DH, Barondeau DP. Frataxin Traps Low Abundance Quaternary Structure to Stimulate Human Fe-S Cluster Biosynthesis. Biochemistry. 2025 Feb 18;64(4):903-916. doi: 10.1021\/acs.biochem.4c00733. Epub 2025 Feb 5. PMID: 39909887; PMCID: PMC11840927 (12.3.1) method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    7. Roy S, Wang B, Roy K, Tian Y, Bhattacharya M, Williams S, Yin Q. \u201cCrystal structures reveal nucleotide-induced conformational changes in G motifs and distal regions in human guanylate-binding protein 2.\u201d Communications biology 2025 Feb 22 ;8(1):282, PMID: 39987405, PMCID: PMC11846989 (12.3.1) method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    8. Olp MD, Bursch KL, Wynia-Smith SL, Nu\u00f1ez R, Goetz CJ, Jackson V, Smith BC. \u201cMultivalent nucleosome scaffolding by bromodomain and extraterminal domain tandem bromodomains.\u201d The Journal of biological chemistry 2025 Mar ;301(3):108289. PMID: 39938804. PMCID: PMC11930079. method SAXS<\/em> beamline 12.3.1<\/em><\/li>\n\n\n\n
    9. Arkinson C, Dong KC, Gee CL, Costello SM, Soe AC, Hura GL, Marqusee S, Martin A. \u201cNUB1 traps unfolded FAT10 for ubiquitin-independent degradation by the 26S proteasome.\u201d Nature structural & molecular biology 2025 Apr 11. doi: 10.1038\/s41594-025-01527-3. PMID: 40217121. PMCID: PMC12285911. method SAXS \u00b7 beamline 12.3.1 \u00b7 staff author: Gregory L. Hura<\/em><\/li>\n\n\n\n
    10. Fenwick MK, Mayclin SJ, Seibold S, DeRocher AE, Subramanian S, Phan IQ, Dranow DM, Lorimer DD, Abramov AB, Choi R, Hewitt SN, Edwards TE, Bullard JM, Battaile KP, Wower IK, Soe AC, Tsutakawa SE, Lovell S, Myler PJ, Wower J, Staker BL. Architecture of Pseudomonas aeruginosa glutamyl-tRNA synthetase defines a subfamily of dimeric class Ib aminoacyl-tRNA synthetases. Proc Natl Acad Sci U S A. 2025 May 13;122(19):e2504757122. doi: 10.1073\/pnas.2504757122. Epub 2025 May 9. PMID: 40343997 (12.3.1) method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    11. Berndsen CE, Storm AR, Sardelli AM, Hossain SR, Clermont KR, McFather LM, Connor MA, Monroe JD. The pseudoenzyme \u03b2-amylase9 from Arabidopsis binds to and enhances the activity of \u03b1-amylase3: A possible mechanism to promote stress-induced starch degradation. Proteins. 2025 Jun;93(6):1189-1201. doi: 10.1002\/prot.26803. PMID: 39149391 (12.3.1) method SAXS \u00b7 beamline 12.3.1 \u00b7 non-biomedical<\/em><\/li>\n\n\n\n
    12. Khmelinskaia A, Bethel NP, Fatehi F, Mallik BB, Antanasijevic A, Borst AJ, Lai SH, Chim HY, Wang JY\u2019, Miranda MC, Watkins AM, Ogohara C, Caldwell S, Wu M, Heck AJR, Veesler D, Ward AB, Baker D, Twarock R, King NP. \u201cLocal structural flexibility drives oligomorphism in computationally designed protein assemblies.\u201d Nature structural & molecular biology 2025 Jun ;32(6):1050-1060 PMID: 40011747; PMCID: PMC12170342 (12.3.1) method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    13. Wardell SJT, Yung DBY, Nielsen JE, Lamichhane R, S\u00f8rensen K, Molchanova N, Herlan C, Lin JS, Br\u00e4se S, Wise LM, Barron AE, Pletzer D. \u201cA biofilm-targeting lipo-peptoid to treat Pseudomonas aeruginosa and Staphylococcus aureus co-infections.\u201d Biofilm 2025 Jun ;9:100272. PMID: 40248507. PMCID: PMC12005307. method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    14. Eneli A, Wang K, Gan J, Diwan R, Lu Z, Yu M, Ackermann R, Shay B, Schwendeman A. \u201cA Comparative Study on Physicochemical and Analytical Characterizations of Doxil\u00ae and its Generic Drug Products.\u201d The AAPS journal 2025 Jun 02 ;27(4):100 PMID: 40457095 DOI: 10.1208\/s12248-025-01058- 1(12.3.1) method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    15. Longo MA, Ahmed SM, Chen Y, Tsai CL, Namjoshi S, Shen R, Ahmed Z, Wang X, Perera RL, Arvai A, Lee M, Kong LR, Engl W, Ng WS, Zhao ZW, Venkitaraman AR, Tainer JA, Schlacher K. \u201cBRCA2 C-terminal clamp restructures RAD51 dimers to bind B-DNA for replication fork stability.\u201d Molecular cell 2025 Jun 05 ;85(11):2080-2096.e6 PMID: 40441151 [also TOC3]<\/em><\/strong> method MX; SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    16. Gupta K, Sekuli\u0107 N, Allu PK, Sapp N, Huang Q, Sarachan K, Christensen M, Lund R, Krueger S, Curtis JE, Gillilan RE, Van Duyne GD, Black BE. \u201cSolution conformational differences between conventional and CENP-A nucleosomes are accentuated by reversible deformation under high pressure.\u201d Chromosome research: an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology 2025 Jun 12 ;33(1):11 PMID: 40500551; PMCID: PMC12585742 (12.3.1) method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    17. Shweta H, Gupta K, Zhou Y, Cui X, Li S, Lu Z, Goldman YE, Dantzig JA. \u201cCharacterization and structural basis for the brightness of mCLIFY: a novel monomeric and circularly permuted bright yellow fluorescent protein.\u201d Biophys J. 2025 Jul 1;124(13):2133-2149. doi: 10.1016\/j.bpj.2025.05.012. PMID: 40405461. method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    18. Rambo RP, Tainer JA. \u201cInformation theory optimization of signals from small-angle scattering measurements.\u201d Biophysical journal 2025 Aug 05 ;124(15):2511-2522. PMID: 40581817; PMCID: PMC12414664. method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    19. Driskill MM, Coates IA, Hurst PJ, Rajesh NU, Dulay MT, Waymouth RM, Akahata W, Matsuda K, Smith JF, Jacobson GB, Perry JL, Tian S, DeSimone JM. \u201cLyophilized SARS-CoV-2 self-amplifying RNA vaccines for microneedle array patch delivery.\u201d Journal of controlled release : official journal of the Controlled Release Society 2025 Aug 10 ;384:113944. PMID: 40499765. method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    20. Bogen MP, Swofford WM, Chittari SS, Knight AS. \u201cStructure-Function Relationships in Sequence-Controlled Copolymers for Rare Earth Element Chelation.\u201d Journal of the American Chemical Society 2025 Aug 27 ;147(34):30885-30896. PMID: 40804018. method SAXS \u00b7 beamline 12.3.1 \u00b7 non-biomedical<\/em><\/li>\n\n\n\n
    21. Gupta R, Dickey TH, Salinas ND, Patel PN, Ma R, Shi D, Singleton M, Ouahes T, Pham TP, Miura K, Long CA, Lambert LE, Tolia NH. \u201cA combined designed CSP and Pfs48\/45 infection and transmission blocking vaccine for malaria.\u201d NPJ vaccines 2025 Sep 02 ;10(1):208. PMID: 40897705; PMCID: PMC12405497. method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    22. Feinberg MA, Le MT, Carpio KL, Knyazhanskaya E, Barrett ADT, Choi KH. Interaction of West Nile virus NS5 with orthoflavivirus SLA RNAs and their effects on viral replication and inhibition. J Virol. 2025 Sep 23;99(9):e0202324. PMID: 40824093. doi: 10.1128\/jvi.02023-24. PMCID: PMC12455937. method<\/em> SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    23. Nguyen BV, \u00d6zden C, Dong K, Koc OC, Torres-Ocampo AP, Dziedzic N, Flaherty D, Huang J, Sankara S, Abromson NL, Tomchick DR, Fissore RA, Chen J, Garman SC, Stratton MM. A domain-swapped CaMKII conformation facilitates linker-mediated allosteric regulation. Nat Commun. 2025 Sep 26;16(1):8461. PMID: 41006217. doi: 10.1038\/s41467-025-63249-w. PMCID: PMC12474881. method<\/em> SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    24. Nguyen K, Biswas S, Kc S, Walgren A, Nicholson V, Childs C, Medina-Rodriguez BX, Alvarado V, Sukenik S, Holehouse A, Boothby TC. \u201cA phase transition modulates the protective function of a tardigrade disordered protein during desiccation.\u201d Protein science : a publication of the Protein Society 2025 Oct ;34(10):e70300. PMID: 40944443. method SAXS \u00b7 beamline 12.3.1 \u00b7 non-biomedical<\/em><\/li>\n\n\n\n
    25. Tran TQ, Fenwick MK, Edwards TE, Dranow DM, Abendroth J, Shek R, Tillery LM, Craig JK, Voorhis WSV, Myler PJ. Crystal structure of a complete threonyl tRNA synthetase: toggle clamp model?. Biochem Biophys Res Commun. 2025 Oct 20;785:152677. PMID: 41016338. doi: 10.1016\/j.bbrc.2025.152677. method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n\n\n\n
    26. AbdElwakil MM, Ni J, Ramsay-Burrough S, Hurst PJ, McClellan RL, Khasnavis SR, Jia Y, Masud SR, Blake TR, Sallets A, Haabeth OAW, Sagiv-Barfi I, Czerwinski DK, Herrera-Barrera M, Levy R, Wender PA, Kumar ME, Waymouth RM. \u201cIn Vivo mRNA Delivery to the Lung Vascular Endothelium by Dicationic Charge-Altering Releasable Transporters.\u201d Journal of the American Chemical Society 2025 Nov 05 ;147(44):40146-40157. PMID: 41118665 PMCID: PMC13186261. ( method SAXS \u00b7 beamline 12.3.1)<\/em><\/li>\n\n\n\n
    27. Hurst PJ, Jia Y, Ramsay-Burrough S, McClellan RL, Arens JT, Khasnavis SR, Del Castillo TJ, AbdElwakil MM, Lueckheide MJ, Prabhu VM, Waymouth RM. \u201cThe Structure and Morphology of Single-Component Oligomeric RNA Delivery Vectors Derived from Amphiphilic Charge-Altering Releasable Transporters.\u201d ACS nano 2025 Nov 18 ;19(45):38954-38969. PMID: 41194596. method SAXS \u00b7 beamline<\/em> 12.3.1<\/em><\/li>\n\n\n\n
    28. Delgado R, Vishwakarma J, Sanlley Hernandez JO, Tansiongco M, Cuell A, Dabrowska A, Basu R, Schmidpeter PAM, Hu Y, Tsutakawa SE, Cooley CB, Amaro RE, Harris RS. \u201cA split luciferase system for studying coronavirus Mpro dimerization in vitro and in living cells.\u201d The Journal of biological chemistry 2025 Dec ;301(12):110890. PMID: 41197737. PMCID: PMC12719657. method SAXS \u00b7 beamline 12.3.1<\/em><\/li>\n<\/ol>\n\n\n\n

      TOC3 \u2014 Flexible Macromolecular Crystallography (MX) (23)<\/h2>\n\n\n\n
        \n
      1. Craven, G.B., H. Chu, J.D. Sun, J.D. Carelli, B. Coyne, H. Chen, Y. Chen, X. Ma, S. Das, W. Kong, A.D. Zajdlik, K.S. Yang, S.H. Reisberg, P.A. Thompson, J.R. Lipford, and J. Taunton, “Mutant-selective AKT inhibition through lysine targeting and neo-zinc chelation,” Nature 2025 Jan 637(8044), 205-214 (2025). PMID: 39506119 (doi: 10.1038\/s41586-024-08176-4) (2.0.1, 8.3.1) method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      2. Maria G Juarez, Sara M O’Rourke, John V Dzimianski, Delia Gagnon, Gabriel Penunuri, Vitor H B Serr\u00e3o, Russell B Corbett-Detig, Lawrence M Kauvar, Rebecca M DuBois. Structures of respiratory syncytial virus G bound to broadly reactive antibodies provide insights into vaccine design. Sci Rep. 2025 Mar 13;15(1):8666.doi: 10.1038\/s41598-025-92886-w. PMID: 40082629 PMCID: PMC11906780 (8.3.1) method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      3. Zakrzewska S, Nixon SA, Chen Z, Hajare HS, Park ER, Mulcahy JV, Arlinghaus KM, Neu E, Konovalov K, Provasi D, Leighfield TA, Filizola M, Du Bois J, Minor DL Jr. Structural basis for saxitoxin congener binding and neutralization by anuran saxiphilins. Nat Commun. 2025 Apr 24;16(1):3885. doi: 10.1038\/s41467-025-58903-2. PMID: 40274765; PMCID: PMC12022044. (8.3.1) method MX \u00b7 beamline<\/em> 8.3.1<\/em><\/li>\n\n\n\n
      4. Detomasi TC, et al. Structure-based discovery of highly bioavailable, covalent, broad-spectrum coronavirus M(Pro) inhibitors with potent in vivo efficacy. Sci Adv. 2025 Apr 25. doi: 10.1126\/sciadv.adt7836. PMID: 40267184; PMCID: PMC12017303. method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      5. Hou K, Huang W, Qi M, Tugwell TH, Alturaifi TM, Chen Y, et al. De novo design of porphyrin-containing proteins as efficient and stereoselective catalysts. Science. 2025 May 8;388(6747):665-670. doi: 10.1126\/science.adt7268. PubMed PMID: 40339022; PubMed Central PMCID: PMC12316402. method MX<\/em> beamline 8.3.1<\/em><\/li>\n\n\n\n
      6. Frigon L, Pascal JM. \u201cCrystal structure and mutagenesis of a nucleic acid-binding BRCT domain in human PARP4.\u201d The Journal of biological chemistry 2025 May 22 ;301(6):110277. PMID: 40412520; PMCID: PMC12212138. DOI: 10.1016\/j.jbc.2025.110277 method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      7. Correy GJ, Rachman MM, Togo T, Gahbauer S, Doruk YU, Stevens MGV, Jaishankar P, Kelley B, Goldman B, Schmidt M, Kramer T, Radchenko DS, Moroz YS, Ashworth A, Riley P, Shoichet BK, Renslo AR, Walters WP, Fraser JS. Exploration of structure- activity relationships for the SARS-CoV-2 macrodomain from shape-based fragment linking and active learning. Sci Adv. 2025 May 30;11(22):veads7187. doi: 10.1126\/sciadv.ads7187. Epub 2025 May 28. PMID: 40435250; PMCID: PMC12118597. method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      8. Walters BT, Patapoff AW, Kiefer JR, Wu P, Wang W. \u201cIntegrating Hydrogen Exchange with Molecular Dynamics for Improved Ligand Binding Predictions.\u201d Journal of chemical information and modeling 2025 Jun 23 ;65(12):6144-6154 PMID: 40495786; PMCID: PMC12199734 (8.3.1) method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      9. Flowers J, et al. Expanding automated multiconformer ligand modeling to macrocycles and fragments. Elife. 2025 Jun 30. doi: 10.7554\/eLife.103797. PMID: 40586518; PMCID: PMC12208665. method MX \u00b7<\/em> beamline 8.3.1<\/em><\/li>\n\n\n\n
      10. Fangyu Liu, Olivier Mailhot, Isabella S Glenn, Seth F Vigneron, Violla Bassim, Xinyu Xu, Karla Fonseca-Valencia, Matthew S Smith, Dmytro S Radchenko, James S Fraser, Yurii S Moroz, John J Irwin, Brian K Shoichet. The impact of library size and scale of testing on virtual screening. Nat Chem Biol. 2025 Jul;21(7):1039-1045.doi: 10.1038\/s41589-024-01797-w. Epub 2025 Jan 3. PMID: 39753705 (8.3.1) method<\/em> MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      11. Trinh TKH, Jin B, Zuckermann RN, Chen CL. Assembly of Metalloporphyrin Peptoids into Crystalline Nanomaterials as a Multifunctional System for Biomimetic Catalysis and Sensing. ACS Appl Mater Interfaces. 2025 Aug 6;17(31):44347-44359. doi: 10.1021\/acsami.5c05546. PubMed PMID: 40638595. method MX \u00b7 beamline 8.3.1 \u00b7 non-biomedical<\/em><\/li>\n\n\n\n
      12. Lee YJ, Ercius P, Luo X, Butterfoss GL, Yu T, Zhang J, et al. Three-Dimensional Crystals Assembled by Linear Oligopeptoids. Nano Lett. 2025 Aug 6;25(31):11940-11946. doi: 10.1021\/acs.nanolett.5c02506. PubMed PMID: 40719458. method MX \u00b7 beamline 8.3.1 \u00b7 non-biomedical<\/em><\/li>\n\n\n\n
      13. Chakma P, et al. Assembled peptoid crystalline nanomaterials as carbonic anhydrase mimics for promoted hydration and sequestration of CO(2). Nat Commun. 2025 Aug 9. doi: 10.1038\/s41467-025-62366-w. PMID: 40783489; PMCID: PMC12335565. method MX \u00b7 beamline 8.3.1 \u00b7 non-biomedical<\/em><\/li>\n\n\n\n
      14. Hunt SE, Klaus C, John AE, Zarifi N, Martinez A, Feixas F, Garcia-Borr\u00e0s M, Thompson MC, Chica RA. \u201cDistal Mutations in a Designed Retro-Aldolase Alter Loop Dynamics to Shift and Accelerate the Rate-Limiting Step.\u201d Journal of the American Chemical Society 2025 Aug 27 ;147(34):30723-30736. PMID: 40802856. BL 8.3.1 method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      15. Chou C, Kang M, Parkinson DY, Sulyanto R, Ho SP. Silver diamine fluoride differentially affects dentin and hypomineralized enamel permeabilities. Dent Mater. 2025 Sep; 41(9):1167-1178. PMID: 40603236. doi: 10.1016\/j.dental.2025.06.011. PMCID: PMC12702468. BL 8.3.2 method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      16. San Felipe CJ, Batra J, Muralidharan M, Malpotra S, Anand D, Bauer R, Verba KA, Swaney DL, Krogan NJ, Grabe M, Fraser JS. Coupled equilibria of dimerization and lipid binding modulate SARS Cov 2 Orf9b interactions and interferon response. Elife. 2025 Sep 17;14. PMID: 40960494. doi: 10.7554\/eLife.106484. PMCID: PMC12443476. BL 8.3.1 method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      17. Zarifi N, Asthana P, Doustmohammadi H, Klaus C, Sanchez J, Hunt SE, Rakotoharisoa RV, Osuna S, Fraser JS, Chica RA. Distal mutations enhance catalysis in designed enzymes by facilitating substrate binding and product release. Nat Commun. 2025 Sep 30;16(1):8662. PMID: 41027962. doi: 10.1038\/s41467-025-63802-7. PMCID: PMC12484545. BL 8.3.1 method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      18. Ford J, Goring AK, Lee Y, Chen M, Mahoney BJ, Sawaya MR, Shafaat HS, Loo JA, Clubb. Structural basis of heme scavenging by the ChtA and HtaA hemophores in Corynebacterium diphtheriae. J Biol Chem. 2025 Oct;301(10):110633. PMID: 40876592. doi: 10.1016\/j.jbc.2025.110633. PMCID: PMC12494546. BL 8.3.1 method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      19. Eng VH, Gasc\u00f3n M, Kakkis A, Tezcan FA. \u201cDesign of a protein scaffold with a selective, Bi-containing heterodinuclear metal coordination motif.\u201d Journal of inorganic biochemistry 2025 Oct 07 ;274:113104. PMID: 41072111; PMCID: PMC13477629. BL 8.3.1 method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      20. Suryawanshi RK, Jaishankar P, Correy GJ, Rachman MM, O’Leary PC, Taha TY, Matsui Y, Zapatero-Belinchon FJ, McCavitt-Malvido M, Doruk YU, Stevens MGV, Diolaiti ME, Jogalekar MP, Chen H, Richards AL, Kongpracha P, Bali S, Montano M, Rosecrans J, Matthey M, Toto T, Gonciarz RL, Gopalkrishnan S, Neitz RJ, Krogan NJ, Swaney DL, Shoichet BK, Ott M, Renslo AR, Ashworth A, Fraser JS. The Mac1 ADP-ribosylhydrolase is a Therapeutic Target for SARS-CoV-2. Elife Nov 2025. PMID: 41258893. PMCID: PMC12629595. DOI: 10.7554\/eLife.103484. BL 8.3.1 method MX \u00b7 beamline 8.3.1<\/em><\/li>\n\n\n\n
      21. Hoffnagle AM, Herold RA, Tsai CY, Shiau AA, Britt RD, Tezcan FA. \u201cDe Novo Design of a Metalloprotein with a Synthetically Inspired Dinuclear Paddlewheel Coordination Motif.\u201d Journal of the American Chemical Society 2025 Nov 05 ;147(44):40788-40798. PMID: 41143657. BL 8.3.1 method MX \u00b7<\/em> beamline 8.3.1<\/em><\/li>\n\n\n\n
      22. Asthana P, Lee S, MacDonald CM, Seiple IB, Fraser JS. Initial leads to combat streptogramin resistance generated from X-ray fragment screening against VatD. Structure. 2025 Dec 4;33(12):2071-2083.e3. PMID: 40945513. Doi: 10.1016\/j.str.2025.08.017. PMCID: PMC12435910. BL 8.3.1 method MX \u00b7<\/em> beamline 8.3.1<\/em><\/li>\n\n\n\n
      23. Marsee JD, Brambley CA, Ho T, Callaway WW, Jansch AL, Taylor K, Watson-Sanders SR, Williams B, Wolvington A, Nguyen CT, Khan L, Cabrera C, Dela Cerna MVC, Wallen JR, Weiland MH, Miller JM. \u201cExpansion of the known poly(aspartic acid) hydrolases through the identification of four new PahZ1 homologs.\u201d Protein engineering, design & selection : PEDS 2025 Dec 23 ;39. PMID: 41761765. PMCID: PMC13017698. BL 8.3.1 method MX \u00b7 beamline 8.3.1 \u00b7 non-biomedical<\/em><\/li>\n<\/ol>\n\n\n\n

        TOC4 \u2014 High-Throughput X-Ray Mass Spectrometry (XFMS) (2)<\/h2>\n\n\n\n
          \n
        1. Gupta S, Russell B, Kristensen LG, Tyler J, Costello SM, Marqusee S, Rad B, Ralston CY. Enabling simultaneous photoluminescence spectroscopy and X-ray footprinting mass spectrometry to study protein conformation and interactions. Anal Methods. 2025 Feb 6;17(6):1214-1225. doi: 10.1039\/d4ay01670j. PMID: 39749913; PMCID: PMC11802294. method: XFMS \u00b7 beamline 3.3.1\u00b7 staff author: Corie Y. Ralston; Sayan Gupta; Brandon Russell<\/em><\/li>\n\n\n\n
        2. Ralston CY, Gupta S, Del Mundo JT, Soe AC, Russell B, Rad B, Tyler J, Paul S, Kahan DN, Kristensen LG, Subramanian S, Kidd S, Burnett K, Sankaran B, Classen S, Prigozhin DM, Taylor JR, Dickert JM, Royal KB, Rozales A, Ortega SL, Allaire M, Nix JC, Hura GL, Holton JM, Hammel M, Adams PD. ALS-ENABLE: creating synergy and opportunity at the Advanced Light Source synchrotron structural biology beamlines. Journal of synchrotron radiation 2025 Jul 01 ;32(Pt 4):1059-1067l. PMID: 40531663 PMCID: PMC12236258. [also TOC1, TOC2, TOC3]<\/em><\/strong> staff author: Gregory L. Hura; Michal Hammel; Corie Ralson; Sayan Gupta; Kathryn Burnett, Scott Classen, Banumathi Sankaran; James Holton; Paul Adams; Daniil Prigozhin; Jay Nix; Stacey Ortega<\/em><\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"

          173 publications from all four TOCs, listed in order from TOC1 \u2013 TOC4. TOC1 \u2014 Rapid Response Crystallography (120) TOC2 \u2014 High Quality and High Throughput SAXS (28) TOC3 \u2014…
          Read more<\/a><\/p>\n","protected":false},"author":9,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-3860","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/als-enable.lbl.gov\/wordpress\/wp-json\/wp\/v2\/pages\/3860","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/als-enable.lbl.gov\/wordpress\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/als-enable.lbl.gov\/wordpress\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/als-enable.lbl.gov\/wordpress\/wp-json\/wp\/v2\/users\/9"}],"replies":[{"embeddable":true,"href":"https:\/\/als-enable.lbl.gov\/wordpress\/wp-json\/wp\/v2\/comments?post=3860"}],"version-history":[{"count":1,"href":"https:\/\/als-enable.lbl.gov\/wordpress\/wp-json\/wp\/v2\/pages\/3860\/revisions"}],"predecessor-version":[{"id":3861,"href":"https:\/\/als-enable.lbl.gov\/wordpress\/wp-json\/wp\/v2\/pages\/3860\/revisions\/3861"}],"wp:attachment":[{"href":"https:\/\/als-enable.lbl.gov\/wordpress\/wp-json\/wp\/v2\/media?parent=3860"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}